rs3161550 SNP Detail

Summary

• ID
  rs3161550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52820061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCCTCCCAC TCCTGCCTCA CCACCTGAAC ATTCCCATAT GCTGGAGCAT TAAGCCTTCA
  CAGGACCAAG GGCCTTCTCT CCCATTGATG CCAGATAAGG TCAACCTCTG CTAAATATGC
  AGCTGGAGCC ATGGGTCCTT CCATATGCAT TCTTTGGTTG GTGGTTTAGT TCCTGGGAGC
  TCTGGGGGGG AGGGAGTCTG GTTGGTTGAT ATTGTTGTTC TTCCTATGGG GTTGCAAACC
  CCTTCCACTT CTTCAGTCCT TTCCCTAACT CCTCCATTGG AATATCCCTG TGCTCAGTCT
  R
  ATGATTCGCT GCAAGCATTC ATATCTGTAT CGGTAAGGCT CTGGCAGAGC GTCTCAGGAG
  ACATCCATAT CAGGTTCCTG TCAGCAAGTA CTTCTTGACA TCAGCAATAG TGACTGGGTT
  TGGTGGCTGC ATACAAGTTG TACTTCGTTT ATTATCTTGC TTGTCTTATT GCTGCAGCTA
  AGACTCCTAA TGCTATATTG AATAAGAGTG AAGAAAGTGA ATCTCTTTGT CCTGTTCTTG
  ATTTTCCTGT AAAGGGTTTG GATTTTTGCC CATTTAATTT ATATATTGAC TATAGATTTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39270972	mCV23549502	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss139509604	ENSMUSSNP5783534	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss324630128	CHEV_14_53202279	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3161550					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52820061 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	1985 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	1391 bp downstream