rs31616685 SNP Detail

Summary

• ID
  rs31616685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:173151933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAC TGATCTTTGC TTTTGTGAGG
  Y
  AGCTATTAGA TCACTCTGTA CCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45062627	mCV23111381	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss49757158	NES13025359	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	T	T	C	C	C		T	T	C	C		C
ss146220194	ENSMUSSNP7074882	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320131696	CHEV_1_175254497	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31616685					SNP	T	T	C	C	T	C	T	T	C	C	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49757158	NES13025359	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:173151933 () rs orientation: forward

Symbol	Name	Function Class
Rr423669	regulatory region 423669	240 bp distal
Rr423670	regulatory region 423670	360 bp distal
Rr423671	regulatory region 423671	1093 bp proximal