rs31616756 SNP Detail

Summary

• ID
  rs31616756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:175795584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGAGAT CAGTGTTTTA
  CTAAAACTGT TGCCTATAAA ATGAAGTTAT TTAATAATGT CTTATCCTAT GTTTACTAAG
  ACTCCAGAGT CATTGTTTGG AGCCATTCAT ATATTATCTC ATTTAATCAC CACACCATCA
  AAGGGTGGGT GCTATTATCC CCCTTTCACA GATAGGGAGA CTGAGGCTTA CAAGAGATTA
  Y
  ATGGATTGCT ACTGTCTCCC AGTTTGTGTC AGTGCTATAA TTCAAATACA GATTTCTCTG
  ATTCCCCAAA CACTTAATTA ATTTGTCCAA GAAATGTTTG TATATCAGGT GAGTCATTTC
  AAGACCAATA AACATTAGTT TACAATCTAC TGCCAGCCCA TGTGGTCTTG GTTGAGTTCT
  GTTTTCTTCT TTGATTAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45052023	mCV24041789	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss146327512	ENSMUSSNP4269511	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
ss320153324	CHEV_1_177898149	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31616756					SNP	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175795584 () rs orientation: forward

Symbol	Name	Function Class
Pld5	phospholipase D family member 5	Intron
Rr423868	regulatory region 423868	1383 bp distal