rs31616761 SNP Detail

Summary

• ID
  rs31616761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135106743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccctccct cctcttctct cctctcTTCC
  AACATTACCC CTGTTTCATC TCCCCAACCA TACCAAGAGC GCTGCTTGAA CGCTCTGCAC
  CTCAGTGTTT GTTCCCCCGA TGCCCCTGAC AGATAGGAGC CCAGAGAACT CTCTGTAGGC
  Y
  AGGCTAGCAA TGTGACGCTG ACTCAGCTTT TGCTTCAAAG TGGGGGTGCA AAGGTCCCTG
  GCCACACCTT TTTGTGGGAA ACACGGAGGA AATTCCCAGC ATGCAAAAGA GACTAAAGTT
  AGACACAGAG ATCCAACCCC CTAGTTCTGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45052029	mCV25393329	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss145526703	ENSMUSSNP88580	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss319988310	CHEV_1_137075582	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31616761					SNP	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135106743 () rs orientation: forward

Symbol	Name	Function Class
Rr419094	regulatory region 419094	within coordinates
Rr419095	regulatory region 419095	1657 bp proximal
Tssr13831	transcription start site region 13831	1881 bp downstream