rs31617619 SNP Detail

Summary

• ID
  rs31617619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151853393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTCTAA GGAAATAGCT
  GAGATCTGGG AGAGCTCTCG GTTGTCACAA TGATCAGGTG ACGCTAGCAT TTGCAGAAGG
  TTTGGAAGGC TCAGAGATGC TACATGAACT GCCTGGCTTG GTGAAGAATT GGGAAACATT
  CCAAACAATT TTCAAGTGTC TTGTTAGATA TTCAGACTGA CAAAGTGGGA AATGTAATTA
  Y
  GTAAGCCTAG GCTCTGACTG TTTTATACGG GAAGTAAGTA CTCTTTGTTC TGAATTCTCC
  TAGACTGCAG TGACCATGCC AATCAAAGAC CCATTTGTTT TATGCAAAAG CAAGATTCCT
  TCATTTCAGA CAGCGACATC CCTAACCAGT GCACTGCCTC TGTTATTTAA CCTTTAGCGT
  GCATTTCAGT CAGCTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45552803	mCV24210676	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136101099	ENSMUSSNP4711165	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321028236	CHEV_3_151810720	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31617619					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151853393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587466	regulatory region 587466			1912 bp distal
Rr587467	regulatory region 587467			within coordinates
Rr587468	regulatory region 587468			1633 bp proximal
Tssr1099	transcription start site region 1099			370 bp downstream