rs31618068 SNP Detail

Summary

• ID
  rs31618068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40516748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTAAGTC AGCCAATTCT
  ATGAAAGATC TATGAAAACA GTAACGTACA ATAAATCCAA TTCTAAGATT CTGTGCATGC
  CAATTCAACT ATAATGATTT GAGAATGAGG GGGCTAAAAA GCTCCAGTCT CTGTTTTTTA
  ACCCCCCCAC ACACACACAC ACACAAATAC AAATAACCTT GCTTTTCATG GTACTTAGGA
  Y
  CATAATTTGT TGGCCCTTGC AGGCAGGGAC TTGGTCATTA ACTGCCTTTT CCGTATCAAG
  GACCATGTAC TGTACTGTCA TAACCTCATA TGGTCATATA GCTAATGTGA TGTAATAAGA
  CAAGTGGCCT TCAGCCTTGT GCTAAGATTT GCTCAGCCAT ACCTTTCATG AGGTAACTCT
  TTACACCTTT AAAAAGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39308324	mCV23354262	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147693525	ENSMUSSNP226431	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31618068					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40516748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	1018 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	797 bp proximal
Rr501589	regulatory region 501589	1694 bp proximal
Tssr4586	transcription start site region 4586	1943 bp upstream
Tssr131170	transcription start site region 131170	1529 bp upstream
Tssr131171	transcription start site region 131171	1560 bp upstream
Tssr131172	transcription start site region 131172	1642 bp upstream
Tssr131173	transcription start site region 131173	1668 bp upstream
Tssr131174	transcription start site region 131174	1717 bp upstream
Tssr131175	transcription start site region 131175	1856 bp upstream
Tssr131176	transcription start site region 131176	1907 bp upstream
Tssr131177	transcription start site region 131177	1956 bp upstream
Tssr131178	transcription start site region 131178	1985 bp upstream
Zfpm2	zinc finger protein, multitype 2	1690 bp upstream