rs31618117 SNP Detail

Summary

• ID
  rs31618117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151851694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCTCTTT TGCTTTGTTG TGGGAACTTT TCAGTGTCTA
  AAGGTCCCTA AGCCAGGAAG TGAGTCCCTC CAAGTTCAGA CACTCCCATT CCCAATGACT
  Y
  GCCCAAGTCA AAGGCATCCT TCAACTCTAA GGACAAGACA GAAATCAAAA GTTAGTGCTG
  TGCATCATTT GAGAGAAAAG AAAATCTCCT CATTTATAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45051946	mCV24640119	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145725037	ENSMUSSNP310435	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31618117					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151851694 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	654 bp distal
Rr420391	regulatory region 420391	69 bp distal
Rr420392	regulatory region 420392	1575 bp proximal