rs31619267 SNP Detail

Summary

• ID
  rs31619267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160761703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAGACAA ATGACATCCT TTCTTCCAAA CTGTCTTAAG
  TTCATACTGA TAGTGTTTTC ATTAGCGCCT CCCACAGGGC ATTGTGGTTG AGAACATTTC
  Y
  TAGGCTTCAA CCTTTTATAA AAATATCTTC CCAGGTGTAA ATGTTGTAAC TCAAACTACT
  CAATCTTGAG TTTACCTTTA TATTTGAATA ATACATTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45051958	mCV24552624	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss60334364	NES15825963	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		C		T	T	C	T	T	C	C
ss145902322	ENSMUSSNP3033923	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31619267					SNP	C	C	C	T	C	T	C	T	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60334364	NES15825963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160761703 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	107 bp distal
Rr421729	regulatory region 421729	within coordinates
Rr421730	regulatory region 421730	182 bp proximal
Rr421731	regulatory region 421731	419 bp proximal
Rr421732	regulatory region 421732	1595 bp proximal