rs31619309 SNP Detail

Summary

• ID
  rs31619309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156349895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG GGGGAGGGGA CCTGGTTCCC
  Y
  GCCAAATAAT CTCGGGGTCT AGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45052803	mCV25052703	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31619309					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156349895 () rs orientation: forward

Symbol	Name	Function Class
Csnk2a1-ps3	casein kinase 2, alpha 1 polypeptide, pseudogene 3	1768 bp upstream
Rr372288	regulatory region 372288	within coordinates
Rr421189	regulatory region 421189	within coordinates
Rr421190	regulatory region 421190	1607 bp proximal
Tssr9569	transcription start site region 9569	1749 bp upstream