rs31619313 SNP Detail

Summary

• ID
  rs31619313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135659962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCTGTGC CTGAGGAAGA AATAGAAGGC TCACAGCTGC
  AGTGCAGCCC AGCCGGCAAG CTGGTCCTCA CCCCAGGGGG TCTGGGTGTT CTTCATGTGA
  Y
  GGGAGGGGGG GGGACCTACA TGAGCTGAGT CTCTCTGAGA TGTCAGCTGC GAGCAATGTA
  TTTACAAGGC GAAGGCTCTC CGTTGTTTTC TCTCTTTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45052807	mCV23623712	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss145544227	ENSMUSSNP2203004	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31619313					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135659962 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Gm70721	predicted gene, 70721			1721 bp upstream
Rr419255	regulatory region 419255			1732 bp distal
Rr419256	regulatory region 419256			1231 bp distal
Rr419257	regulatory region 419257			within coordinates
Rr419258	regulatory region 419258			1811 bp proximal