rs31619349 SNP Detail

Summary

• ID
  rs31619349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45017508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCGGTGA GGGTTAAAGA
  TCTTTAAATA AGGAGCCAGT GACAATAAAT AATACTGTAC AGGGGAGGAG AAGGAGGGTC
  CTGGTCTGTG ATTTCAGCCT CGAGACTCCA AGGACCTGTG AGGGTGTAGA GAGGGGAGTT
  TTAGACACAG GGTAGGTTCA GGGGTGGGGT GGGGGAGGGC GCGTAAGATG TTCAATGGTG
  R
  GGTTCTGGAG ACAACAGTTC AGAAAATCAG GCACAGGGCT TCTGGAGTTG GGGAGCCAGA
  GGGTCCCAGG GCCTTAGCTA CCATGGCAGG AGTCAAAGGT CAGAAAACCC CTGGTGGAGA
  GCCAGAGATA AATGTTGAAG GCCGCTGTGC TCACTGGCCT GATTTGGGTA TCTAAGGTTG
  GGGAAGGCAG CAGGGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46051410	mCV22694494	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss149134096	ENSMUSSNP1244658	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31619349					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45017508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	212 bp distal
Cpgi19050	CpG island 19050	1761 bp proximal
Gm45619	predicted gene 45619	93 bp upstream
Gm71276	predicted gene, 71276	352 bp downstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	within coordinates
Mtag2	metastasis associated gene 2	136 bp downstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	1065 bp upstream
Rr400310	regulatory region 400310	840 bp downstream
Rr646420	regulatory region 646420	1381 bp distal
Rr646421	regulatory region 646421	793 bp distal
Rr646422	regulatory region 646422	within coordinates
Tssr72376	transcription start site region 72376	1244 bp upstream