rs31619754 SNP Detail

Summary

• ID
  rs31619754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104434816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTTAAG AGCACTGACT
  GTTCTTCTGA AGGTCCTGAG TTCAAATCCC AGCAACCAGA TGATAGCTCA CAACCATCTG
  TAATGAGATC TGACACTCTC TTCTGGTGTG TCTGAAGACA GCTACAGTGT ACTTACATAT
  AATAATAGAA AATAAATCTT TAAACAAAAA TTCAGTAAGA TGTTTTGGTT GATAAGATGC
  Y
  TGCCACCAAA CCTAGGAGGA CTTGGTGCAT ATGTATACAT TTGTATATTC TTGGATAAAT
  ATATGTATAC ACACACACAC ACATATATAT GTATATATAT GAGTATATAT GTCCATGTGT
  CTATAGATAT GTGTGTGTAT GTGTGTGTAT ATATATGTGG ATAGATAGAT AGATAGATAG
  ATAGATAGAT ATAGATACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45553007	mCV24813158	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss46831008	NES10732237	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C
ss135569231	ENSMUSSNP2890690	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31619754					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831008	NES10732237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104434816 () rs orientation: forward

Symbol	Name	Function Class
A530041M06Rik	RIKEN cDNA A530041M06 gene	847 bp upstream
Rr582533	regulatory region 582533	1701 bp distal
Rr582534	regulatory region 582534	681 bp distal
Rr582535	regulatory region 582535	397 bp proximal