rs31619771 SNP Detail

Summary

• ID
  rs31619771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165065474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTCCCCTG CCCAAGGTGT CTGGATTAAT TCATTCCGTT
  GGCATCCTAT CCTTGGTTCC TACATAGTTA CTCTATTTCC ATTGCCTACG GAAAGTAGGG
  Y
  GTCTCAGCTT CCGCAGAGGA TAAAGATGTT CATCCCGAAT AGTGGAGGAT TGTCTACCAT
  CACTGACCTC CAGAGGTTGG CCCCTGACGC ACTTCCCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45051277	mCV24497795	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss145997568	ENSMUSSNP6024128	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs31619771					SNP	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165065474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	496 bp distal
Rr372385	regulatory region 372385	within coordinates
Rr422343	regulatory region 422343	973 bp distal
Rr422344	regulatory region 422344	1363 bp distal
Rr422345	regulatory region 422345	472 bp distal
Rr422346	regulatory region 422346	945 bp distal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	909 bp upstream
Tssr9804	transcription start site region 9804	1398 bp downstream
Tssr14765	transcription start site region 14765	949 bp upstream
Tssr14766	transcription start site region 14766	914 bp upstream