rs31620378 SNP Detail

Summary

• ID
  rs31620378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190796535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA AACGGCACTT AATGTTTTTA
  R
  TAGTTATCTT GGGAGATGAC TGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45052812	mCV23580225	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss146501362	ENSMUSSNP2324406	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320194662	CHEV_1_192888217	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31620378					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190796535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1216	CpG island 1216	825 bp distal
Nsl1	NSL1, MIS12 kinetochore complex component	within coordinates
Rr29190	regulatory region 29190	within coordinates
Rr396711	regulatory region 396711	1165 bp downstream
Tatdn3	TatD DNase domain containing 3	1406 bp upstream
Tssr10722	transcription start site region 10722	1300 bp downstream
Tssr15751	transcription start site region 15751	1451 bp upstream
Tssr15752	transcription start site region 15752	1427 bp upstream