rs31620779 SNP Detail

Summary

• ID
  rs31620779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190804590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTTGTA CTTGATTAAT
  TTGATTTATA AATCAAAATT TCAAAATTCT GAAAGAATTA TTGTTTGAAT TTCAGGCCTT
  CCTCTGGGTT GACTTCTTTT TTTTTTTGTT TTGTTTTGTT TTTTCAAGAC AGGGTTTCTC
  TGTGTCCTGG CTGTCCTAGA ACTCACTTTG TAGACCAGGC TGGCCTCGAA CTCAGAAATC
  Y
  GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGTGC GCCACTGCTA CCGCCACCAC
  CACCACCACC ACCACCTGGC CTGGGTTGAC TTCTGTGGGC ACGCCTTAGC TGAGGGCTGT
  GACAGGCAGC ATGTGACAGG CACCTTAGCT GAGGGCTTGT TCCGTCTTTG CTCCTGTGAA
  GGCTCCTTCG TAGCAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45052723	mCV23579826	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31620779					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190804590 () rs orientation: forward

Symbol	Name	Function Class
Nsl1	NSL1, MIS12 kinetochore complex component	Intron
Rr426040	regulatory region 426040	233 bp distal
Rr426041	regulatory region 426041	within coordinates