rs3162087 SNP Detail

Summary

• ID
  rs3162087
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100602765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT AACAAAAAAA AATGAAAGTA
  M
  TATTCAAGTA GGTGGTACTA GCATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45494061	mCV24712349	ABI	CRAMUS_MOUSE	f	SNP		C	A	C
ss46805984	NES10726848	PERLEGEN	MM_PANEL2	f	SNP	C				A	C		C	A		A
ss135540433	ENSMUSSNP3344395	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss320849214	CHEV_3_100499372	CHEVERUD	SCREENING_POP	f	SNP							A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3162087					SNP	C	C	A	C	A	C	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805984	NES10726848	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100602765 () rs orientation: forward

Symbol	Name	Function Class
Gm43464	predicted gene 43464	within coordinates
Rr581892	regulatory region 581892	1598 bp distal