rs3162099 SNP Detail

Summary

• ID
  rs3162099
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100602674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG AGAATTAAAT CCAAATATGT
  W
  GTAGTGAGTA TAATAAGCAC ATTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45508520	mCV24712350	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss135540430	ENSMUSSNP6312398	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320849213	CHEV_3_100499281	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3162099					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100602674 () rs orientation: forward

Symbol	Name	Function Class
Gm43464	predicted gene 43464	within coordinates
Rr581892	regulatory region 581892	1507 bp distal