rs31621059 SNP Detail

Summary

• ID
  rs31621059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151839838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTATACT GAATCTTAGC
  TCAGCGCATA GAAATGCCAG CTCTAGAGTC AGACTCCTTG GGTTCAAATC CCGAACCTGC
  CCAGCCTTAT AATTTCGACC AAGCTATTTA ACCGTCCTCA TCCTGTCTTT GTACTTTGGT
  AATACTGTCC ACCATGGACA CATTGCAAAG TCACACCGAG AAAAGCAGAG ACTGCAGATA
  Y
  GTAATGCTTG ATTTTATAAA TCTCAAGAAG CAAGTTGCTA CATCCACTCC AGTAGTGACT
  CTTGTGACAG GTTTAAAAGC CTGGAAGCAG TCACGAGGCA GAGTTTCAAG GAAACTTAAC
  CTCCTGGAAC CTTGGCATTC CCATAGCTAG GATGCCCCAG ATTTGTCCCT GCAATATTGT
  GGAGAGTCTT GCATGCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45553326	mCV23509573	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136101066	ENSMUSSNP2076756	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321028218	CHEV_3_151797165	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31621059					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151839838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587463	regulatory region 587463			44 bp distal