rs31622308 SNP Detail

Summary

• ID
  rs31622308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99662917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTGGAG GCCCCAAGAT
  GTTCAGAGAT GTCAAGTCAG AGCTGTGGAA GACCTGCTGA GGAAATCTGC TAACAGGGAG
  TGGAACCAGC CCAAGAGAAA GCTTGTTGCA GTCAACAGAG ATGAAGAACG TGGAGATCTG
  AAGAGCGCTT TGATATCAGA CATGGAGATG CTGAGTTTGG AGTTGGCTTA GCTGGCTTTT
  R
  GTCTTGCTTT GGTCCATTAT TTCCTCACCA TGACATTTTG GAATGATAAT TTATATCCTG
  TGATGTTGGA GGTATGAGAT CTGCTTTTTG ATTTTGATTT CTTAAGGGAT TACAGTTTAG
  AGATTACATG AATCTCAGAA GAGACTTTAA AAAAAAGGTT TATGTATTTA TTTTATTTAT
  GTGAGTACAC TGTAGCAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
ss39308725	mCV23428515	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148470400	ENSMUSSNP3369655	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss325081755	CHEV_15_99595467	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
rs31622308					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99662917 () rs orientation: forward

Symbol	Name	Function Class
Cers5	ceramide synthase 5	within coordinates
Gm17058	predicted gene 17058	955 bp upstream