rs31622870 SNP Detail

Summary

• ID
  rs31622870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:80514298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCACCT CTCAGGTCAA
  ACTCCCCTGC CCTGCACAGC GGAGGGACTT CCAGCTAGCT GATAATAAAA CCTCTTGCAG
  TTTGCATCAG GTGTGGTTTT ATCTCGAGAT GTTGGGGTGT TGGCCAGCTC ATCCCGGGAC
  TTGAGTGGAG GCCCAGCATC GTGGGTCTTA CAAACCCAAT CTTAAGACAC TGCCTTCCCA
  Y
  GGCCTTTACA TTACTCTCTG TGTCTGTGAA CATACATCTA AATTCCCTTT GCTTTTCTTT
  CATGGTGATA CCAGTTAGAA ATGTAGTATT TATTTGAATT CTAAAATTAT TTCATTTTTG
  AAGCCTTCAA ATAAATACTC AAAGCTATAG ATATCATCGA ACCAAATAAG TCCACATTCA
  AATATGGTCG ATATGAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49758416	NES12391519	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31622870					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49758416	NES12391519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:80514298 () rs orientation: forward

Symbol	Name	Function Class
Rr7859	regulatory region 7859	1923 bp proximal