rs31623040 SNP Detail

Summary

• ID
  rs31623040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82986199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGCCACG GGCTCTCGTC CCATTACAAC CCAGGCCTCC
  CGTACTACCA GCAAAATTTT GTGAGTGAGG TCCGAAGGGT GGCAACAGGT GAGCCAGAGC
  Y
  CCCATAGTAT CTCTCATCCT AGGAGTAGGA TGCAGTATCT GGGAGGCAGG ACTGGCCTGG
  GAACGGATAC CTGGGGTTTC TGCTTCCGGT TTCCTGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39308571	mCV22803183	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss148234885	ENSMUSSNP4805864	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31623040					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82986199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	1507 bp distal
Gm17206	predicted gene 17206	74 bp downstream
Rr404540	regulatory region 404540	1678 bp downstream
Serhl	serine hydrolase-like	within coordinates
Tssr132408	transcription start site region 132408	1788 bp downstream
Tssr132409	transcription start site region 132409	1695 bp downstream
Tssr132410	transcription start site region 132410	1680 bp downstream