rs31623338 SNP Detail

Summary

• ID
  rs31623338
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58543121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CTGACTAGAC AGCTCAGTGG
  M
  TAAAAGCACG TGTCCTGCAA GCGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45052456	mCV22736670	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss149138108	ENSMUSSNP3135822	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31623338					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58543121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	472 bp proximal
Gm15834	predicted gene 15834	1184 bp upstream
Orc2	origin recognition complex, subunit 2	within coordinates
Rr396056	regulatory region 396056	986 bp upstream
Rr411446	regulatory region 411446	313 bp distal
Rr411447	regulatory region 411447	within coordinates
Rr411448	regulatory region 411448	1000 bp proximal
Rr411449	regulatory region 411449	1137 bp proximal
Rr411450	regulatory region 411450	1206 bp proximal
Tssr6780	transcription start site region 6780	1173 bp upstream
Tssr11783	transcription start site region 11783	957 bp downstream
Tssr11784	transcription start site region 11784	984 bp downstream