rs31623348 SNP Detail

Summary

• ID
  rs31623348
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3334534 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTATAATATA ATCTAAAAAA
  CCAGAAAGAG TAGAAACTCT AAAACAGAAG AAACTGGATC TACTTCAGGA AAGATATTTC
  AAAGTAAAGT TTAAATGGCA GAAAAATTAA AGACAATAAT TATATCCCTA TTATGAGATT
  GACTCATGAC AAAAAAACAG TAACAGTATT GTTTTTAATT TGTAGTATTT ACTCAACTCC
  W
  CATTGTTAGG CCTCAAAGAA AGAGGGACAA ATCACTGACT GAAGTGCCTA CTAAAACATC
  AATGCAAATA CTTGCAGCTC TCTGCAACAT TACTCAGTAC CTGTTGCTCC TCCCAGCACT
  GCTCACCTCT CCCCTTCCCC TAAACCTTTC CATCTCAGGG ACTAACTTTC TGCTTCTTCC
  CTTCCCGACT TATTGATCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45553245	mCV22562809	ABI	CRAMUS_MOUSE	f	SNP		T	A					A		A
ss60679015	NES16231798	PERLEGEN	MM_PANEL2	r	SNP	A		T	T	T	T	T		T	T	T	T	T	T	T	T	T
ss136173856	ENSMUSSNP2026561	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31623348					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60679015	NES16231798	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3334534 () rs orientation: reverse

Symbol	Name	Function Class
Alkbh8	alkB homolog 8, tRNA methyltransferase	617 bp upstream
Rr401236	regulatory region 401236	391 bp upstream
Rr673627	regulatory region 673627	within coordinates
Rr673628	regulatory region 673628	164 bp proximal
Rr673629	regulatory region 673629	955 bp proximal
Tssr83612	transcription start site region 83612	601 bp upstream
Tssr83613	transcription start site region 83613	936 bp upstream
Tssr83614	transcription start site region 83614	974 bp upstream