rs31623516 SNP Detail

Summary

• ID
  rs31623516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG GGAAAGTGCG AAAATGAGCC
  R
  ACACAGAACT TCTGACTTTG TGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45052183	mCV24779714	ABI	CRAMUS_MOUSE	f	SNP		G	A				A	G
ss60822424	NES16493739	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		G	G		A	G	G	G		G
ss145737854	ENSMUSSNP3413022	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320071216	CHEV_1_155031543	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31623516					SNP	G	G	A	A	G	A	A	G	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822424	NES16493739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1357 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr28719	regulatory region 28719	441 bp proximal
Tssr14250	transcription start site region 14250	1598 bp downstream
Tssr14251	transcription start site region 14251	1658 bp downstream
Tssr14252	transcription start site region 14252	1689 bp downstream
Tssr14253	transcription start site region 14253	1712 bp downstream
Tssr14254	transcription start site region 14254	1729 bp downstream