rs31623611 SNP Detail

Summary

• ID
  rs31623611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:138800432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATT GCTGCTGCTC CCAGTTCTCA
  Y
  TGGCTGTTCC CTTCTGAGCA GATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46051462	mCV23696925	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145976090	ENSMUSSNP2806188	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322467800	CHEV_7_146406415	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31623611					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:138800432 () rs orientation: forward

Symbol	Name	Function Class
Lrrc27	leucine rich repeat containing 27	within coordinates
Rr657518	regulatory region 657518	1186 bp distal
Rr657519	regulatory region 657519	within coordinates
Rr657520	regulatory region 657520	1274 bp proximal
Tssr69706	transcription start site region 69706	58 bp upstream