rs31624273 SNP Detail

Summary

• ID
  rs31624273
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146204344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTACCAT GTAAAATCTT
  CTTTGAAATG TCTTCCAGCA CATTCCATAG TTCTTAAGTA TTATTGTAAC TAATATAAAG
  TAGAACTTTA AGTTACACGT TAATCTTAGA AATCTGCATT TTAGCATACA TTACAGGTAA
  CAAGGCACAA AGTAAAATAT TTGTGTTACA TTTTGCATTA ATTAATTTAT TTTGGAGGCA
  M
  AAGCCTTTAA TCACAATGCT TGGAAGGCTG TGGGTTTCGA GGCCAGCCTG GTCTACATGG
  AGTTTCAGGC CAGCCAGAAC TACAAAGTGA GACCCTGTCT CAAACAATAT GGTTTGTTCG
  TTCACTTTTT AAATTATGTA TTAATTAATG TACGTGTGTG AATGCAAACG TTCCCAGACT
  CCAGTGAGGG TGACAGTAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45552778	mCV25040872	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss136044819	ENSMUSSNP2963753	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321010535	CHEV_3_146161553	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31624273					SNP	C	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146204344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13920	CpG island 13920	748 bp proximal
Gng5	G protein subunit gamma 5	1247 bp upstream
Rr77342	regulatory region 77342	56 bp proximal
Rr398118	regulatory region 398118	1803 bp upstream
Spata1	spermatogenesis associated 1	within coordinates
Tssr32351	transcription start site region 32351	1116 bp upstream
Tssr32352	transcription start site region 32352	1239 bp upstream
Tssr32353	transcription start site region 32353	1261 bp upstream
Tssr32354	transcription start site region 32354	1482 bp upstream
Tssr32355	transcription start site region 32355	1542 bp upstream
Tssr32356	transcription start site region 32356	1572 bp upstream
Tssr32357	transcription start site region 32357	1600 bp upstream
Tssr36036	transcription start site region 36036	1132 bp downstream
Tssr36037	transcription start site region 36037	1218 bp downstream
Tssr36038	transcription start site region 36038	1499 bp downstream