rs31625748 SNP Detail

Summary

• ID
  rs31625748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:165849841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTCCCT TCCTTCCCCC
  AAGAAATGCA ACTGACTGAG AGGGAGTGGG CTGTTTCTCC ATGTTCTCTG CCATGAGTAG
  GTATTTGAAA GGCTAAACCA AAGTGTTCAA GTTCCCAGTT ACAACTGCTT ATGACCCAAA
  GCAACAAAAC AAAACAAAAC AAAACACTAA AACCCACAAC CACCAATAAT GAAACATCTG
  Y
  AATTTAAGAT AAGTTCAATC AATTTTCTTC AAAGCACTCA CCACTGAAAC AAGTAAAGAT
  GTATCCATTG TGATAGTCAA CATGTCTCTT TTATATACCC AGATAGAAGG GACAAGGAGC
  AGGCTAGTTG GTTGGTTGGT TTGTTGGTTG GCTGGTTGTT TTGAGATAGA AGCTCTAGCA
  TCCTAGACTG GCTTTGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47072080	NES11154726	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31625748					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47072080	NES11154726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:165849841 () rs orientation: forward

Symbol	Name	Function Class
Gm8817	predicted gene 8817	within coordinates
Rr9554	regulatory region 9554	1160 bp proximal