rs3162582 SNP Detail

Summary

• ID
  rs3162582
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37525901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT TTTGTTTGGT TGTTTGGTTC
  A
  TTTTTTCCAG ATAGGGTTTC TCTGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134806518	ENSMUSSNP3313286	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320710342	CHEV_3_37370674	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3162582					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37525901 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
D3Nds46	DNA segment, Chr 3, Nuffield Department of Surgery 46	461 bp proximal
Rr575487	regulatory region 575487	813 bp proximal
Rr575488	regulatory region 575488	892 bp proximal