rs3162588 SNP Detail

Summary

• ID
  rs3162588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37528156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC ATGGTTTCTT TTCTTCTTCT
  Y
  CTTTATGAAC TCTCATTGTT AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45476509	mCV24336624	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss134806545	ENSMUSSNP154055	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320710352	CHEV_3_37372929	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs3162588					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37528156 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
D3Nds46	DNA segment, Chr 3, Nuffield Department of Surgery 46	1678 bp distal
Rr575487	regulatory region 575487	1261 bp distal
Rr575488	regulatory region 575488	1342 bp distal