rs3162597 SNP Detail

Summary

• ID
  rs3162597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37534886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC CTACCAGAAT ATACCTGCTT
  R
  TGAAGGAGAT CTGGCCCGTG TAGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46911230	NES10796396	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G		A		A	G	G
ss134806661	ENSMUSSNP6379628	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss320710392	CHEV_3_37379659	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs3162597					SNP	G	G	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911230	NES10796396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37534886 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	within coordinates
Cpgi13098	CpG island 13098	682 bp proximal
Rr575489	regulatory region 575489	535 bp proximal
Rr575490	regulatory region 575490	669 bp proximal
Tssr28903	transcription start site region 28903	616 bp upstream
Tssr28904	transcription start site region 28904	679 bp upstream
Tssr28905	transcription start site region 28905	733 bp upstream
Tssr28906	transcription start site region 28906	822 bp upstream