rs3162601 SNP Detail

Summary

• ID
  rs3162601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37536717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT TCTTTCTTCC AGAATGGCCA
  R
  CCATAGTAAT GAGAGATGAT TGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46911236	NES10800402	PERLEGEN	MM_PANEL2	f	SNP	A			G	G		G		G	G
ss134806701	ENSMUSSNP4397435	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A
ss320710398	CHEV_3_37381490	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs3162601					SNP	A	A	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911236	NES10800402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37536717 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	within coordinates
Cpgi13098	CpG island 13098	993 bp distal
Rr575489	regulatory region 575489	757 bp distal
Rr575490	regulatory region 575490	1141 bp distal
Tssr28903	transcription start site region 28903	1196 bp downstream
Tssr28904	transcription start site region 28904	1128 bp downstream
Tssr28905	transcription start site region 28905	1075 bp downstream
Tssr28906	transcription start site region 28906	998 bp downstream