rs3162604 SNP Detail

Summary

• ID
  rs3162604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37537477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC CACCATGTGG GTGCCAAGGA
  Y
  CAAACCTTAG GCTATCGGGC TTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45533035	mCV24337304	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss134806713	ENSMUSSNP4671425	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320710405	CHEV_3_37382250	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3162604					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37537477 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	within coordinates
Cpgi13098	CpG island 13098	1753 bp distal
Rr575489	regulatory region 575489	1517 bp distal
Rr575490	regulatory region 575490	1901 bp distal
Tssr28903	transcription start site region 28903	1956 bp downstream
Tssr28904	transcription start site region 28904	1888 bp downstream
Tssr28905	transcription start site region 28905	1835 bp downstream
Tssr28906	transcription start site region 28906	1758 bp downstream