rs31626112 SNP Detail

Summary

• ID
  rs31626112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40520213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATTTCT GATTTTCCGT
  GTTGTTGAGG ATCTGGCTAC TCGTTTAAAA CTAATTATCA TGTAATTTTA GTATATTGCT
  TTAGTATTAC CCTTACCTCA TAGGTACCCT ACATGCAAGT CAGAATTTCT TTTTGGTGTA
  GTTTAAAAAT AAATCTTATC ATACAACTTG TCCTTGAGAT TGGGGGCAGG CTATACATAG
  Y
  TTGCTACAGT TGATTATTCA ATATGCATAA TATAGTACAC TCACACTCCC TGCCTCTCAG
  ATGTAATTCC CTGGCTTTAA CTCAGTGGAT TTCTGTCCCT GTGTGCCAGT TCTCAGTCTA
  AACAACTTAT TTCAAACCAA GGAGTGGACC TCACTTTTGG CGGAAAGCCT ACCTAATCCT
  GTGGCAACAC TGTCCTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39309062	mCV23354238	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147693604	ENSMUSSNP5244795	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss324932669	CHEV_15_40488363	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31626112					SNP	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40520213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	591 bp distal
Gm63080	predicted gene, 63080	665 bp upstream
Rr406269	regulatory region 406269	1049 bp proximal
Rr501588	regulatory region 501588	1772 bp distal
Rr501589	regulatory region 501589	1209 bp distal
Rr501590	regulatory region 501590	708 bp distal
Rr501591	regulatory region 501591	674 bp proximal
Tssr4586	transcription start site region 4586	1515 bp downstream
Tssr131170	transcription start site region 131170	1926 bp downstream
Tssr131171	transcription start site region 131171	1896 bp downstream
Tssr131172	transcription start site region 131172	1813 bp downstream
Tssr131173	transcription start site region 131173	1763 bp downstream
Tssr131174	transcription start site region 131174	1735 bp downstream
Tssr131175	transcription start site region 131175	1592 bp downstream
Tssr131176	transcription start site region 131176	1551 bp downstream
Tssr131177	transcription start site region 131177	1496 bp downstream
Tssr131178	transcription start site region 131178	1460 bp downstream
Tssr131179	transcription start site region 131179	1369 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates