rs31626339 SNP Detail

Summary

• ID
  rs31626339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84740776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA TGGCCGCTGT GGTATTTAAA
  Y
  AGTATGAAAA CTGATCTCTT GATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39308872	mCV23859082	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148258148	ENSMUSSNP4177309	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss325039646	CHEV_15_84687005	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31626339					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84740776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7469	CpG island 7469	within coordinates
Phf21b	PHD finger protein 21B	526 bp upstream
Tssr135727	transcription start site region 135727	1491 bp upstream
Tssr135728	transcription start site region 135728	1448 bp upstream
Tssr135729	transcription start site region 135729	1430 bp upstream
Tssr135730	transcription start site region 135730	1387 bp upstream
Tssr135731	transcription start site region 135731	543 bp upstream
Tssr135732	transcription start site region 135732	518 bp upstream
Tssr135733	transcription start site region 135733	484 bp upstream
Tssr135734	transcription start site region 135734	464 bp upstream
Tssr135735	transcription start site region 135735	436 bp upstream
Tssr135736	transcription start site region 135736	29 bp upstream