rs31626417 SNP Detail

Summary

• ID
  rs31626417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:165850986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACTTGCT TTTAATCCCA
  GAACTCAGGA GGAAAGTCTG AGACCAGCCT CTCTATACAG TGAGTTCCAG GGTAACCAGG
  GCCATAAAGT GAGACTGGGT TCAAACAAAC AAACAAACAA ATTTCTGTTG TATGAATTGG
  CCGTTGAATA GCTCGGTGTC CTGAATTTGC TTATTTGCTC ACTGAGAATT CTTCTTGCCC
  Y
  TTTTCTTTCT CAATTTCCCC CAGGATGCTC TGCTTTTATT GTTAGGCCAC CCAGGGATGC
  CCTTGATCCT GCAGTGTCAG AAGCTCAAAT TCTTGAGAGC AATACCCCCT GGCTAGGGAA
  GGGCCAAGGA AAGGTCAAGG CAGAGGAAGC ACAGATGTCA GAGATCTAAG AGCCTGTGTG
  GAGCCTTTAG CTGGGCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47072089	NES11154679	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31626417					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47072089	NES11154679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:165850986 () rs orientation: forward

Symbol	Name	Function Class
Gm8817	predicted gene 8817	within coordinates
Rr9554	regulatory region 9554	15 bp proximal