rs31627329 SNP Detail

Summary

• ID
  rs31627329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:165851319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAAGGCA GAGGAAGCAC
  AGATGTCAGA GATCTAAGAG CCTGTGTGGA GCCTTTAGCT GGGCTACAGC TGGTGCCTTG
  GCTCTCCACT ACTTCCTCCT CTTTGACAAA GCTTTAATGA CACAGTGTTC CTATGAAAGG
  CACAAGAGAA CAGTTACCTA GAGAGGAGCC AGCTGATGTT CCTGTCCGCC TTCAGGTATA
  Y
  GGACAAGGAT GTGGTCATGT CTGTAAGCCT TCTGCAGCCT TTGGTTATTC CATTTCCTAA
  GCCCATCTCT TGAAGGAGTA GAGGACTGTG AGGGATTCAA AACGATGTTA TTCTTATGGG
  CTTTCAAGGC TGTTTCAGTC ATTACAATTT AGACGGGTTT TACTAATCTC CCAAATACAC
  TCTTGGGCAA AAATAATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47072101	NES11154683	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31627329					SNP	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47072101	NES11154683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:165851319 () rs orientation: forward

Symbol	Name	Function Class
Gm8817	predicted gene 8817	within coordinates
Rr9554	regulatory region 9554	within coordinates