rs31628010 SNP Detail

Summary

• ID
  rs31628010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84741229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCATAACT AACTCTTTCC GTGGGTCACA AGAAAAGGAG
  GAAGGAAGGA AAGAAAAGAA AACTCAGGCA CACCAGTCAG AAATGTCTCT TCAATGGATG
  Y
  CAACAGTCTA CATATTTCCT TTACCCCTCA GGAGAAATCT CTCTCTCTCT CTCTCTCTCT
  CTCTCACACA CACACACACA CACACACACC AGAACACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39309348	mCV23859073	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148258163	ENSMUSSNP2040890	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31628010					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84741229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7469	CpG island 7469	434 bp distal
Phf21b	PHD finger protein 21B	979 bp upstream
Rr507073	regulatory region 507073	1428 bp distal
Rr507074	regulatory region 507074	489 bp distal
Rr507075	regulatory region 507075	538 bp proximal
Tssr135727	transcription start site region 135727	1944 bp upstream
Tssr135728	transcription start site region 135728	1901 bp upstream
Tssr135729	transcription start site region 135729	1883 bp upstream
Tssr135730	transcription start site region 135730	1840 bp upstream
Tssr135731	transcription start site region 135731	996 bp upstream
Tssr135732	transcription start site region 135732	971 bp upstream
Tssr135733	transcription start site region 135733	937 bp upstream
Tssr135734	transcription start site region 135734	917 bp upstream
Tssr135735	transcription start site region 135735	889 bp upstream
Tssr135736	transcription start site region 135736	482 bp upstream