rs31628366 SNP Detail

Summary

• ID
  rs31628366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:165851679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTAATCT CCCAAATACA
  CTCTTGGGCA AAAATAATTT ATGGATTCAA AAATTCTTCC GAATAATAGA CTTACTCTGC
  ATATATGACC TAAAGGATCA ATAGTTAGAT GATAGTTTAC AAATATCACA CACAAAAAAA
  GCTCAAGGCC AGAGGCCATG TACCTTGTCT TAATTTTGTG CTATTAATGA GAGACATATC
  R
  GAATGAAGTC TTTGGAGAAA ATTAATTCTG TGACTGTGGA GAAAATTTCT ACAGCTAAGG
  CTGTGAAATC AAAGAATTTG CATGCGGTTA CAGTCAAAAG GAATTAGGGC CCGGTGTGAC
  AAGAAAGGTG CTGTGCCTAC AGTCCTAGCC ACTCAGGAAC CGGAGGGCAG AGTGTCGTTC
  ATGAATTTGA AACCAGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47072110	NES11154686	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31628366					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47072110	NES11154686	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:165851679 () rs orientation: forward

Symbol	Name	Function Class
Gm8817	predicted gene 8817	within coordinates
Rr9554	regulatory region 9554	279 bp distal