rs31628439 SNP Detail

Summary

• ID
  rs31628439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45571353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGCTCA TGGCAGGACA
  AAAAGTATGA AATTACGGGA AGGAGCAGGA TATAGCTTTA AAGAATGCCA ATGTTGCCAT
  TCCATGGTTG TGTGGCCTGG GATAGATTAT TTCACTTACT TGGGCCTCAG TTTGCTAATC
  TATATAGTGG GTATAATACA CAGTCAATAA AGAAAATAGA CGGATGGCAA TAATGACTAG
  R
  TGGGCAGATG CTAATTTAAA AAGGATAATC CTGGAAAGCT TCTTGGAGGA GGTGCTATTT
  GACCTGAGTC ATTTGGATAC TAGGGAGAAA ATGTCCCAAG CTTTGAGAAG AAACGCTGGC
  CGTTTGGAGA GCAGACAGAA TGGCCAGTGT GTCTGGAGCA CAGAGAGCGT AGGGTGTGGT
  GAGCGGGACA GCAGAGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46052454	mCV23847863	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss149150488	ENSMUSSNP6056655	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31628439					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45571353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	1037 bp proximal
Emp3	epithelial membrane protein 3	525 bp upstream
Gm45442	predicted gene 45442	211 bp downstream
Rr368318	regulatory region 368318	827 bp upstream
Rr368319	regulatory region 368319	1047 bp upstream
Rr400324	regulatory region 400324	287 bp downstream
Rr400325	regulatory region 400325	1428 bp upstream
Rr646609	regulatory region 646609	58 bp distal
Rr646610	regulatory region 646610	122 bp proximal
Rr646611	regulatory region 646611	1253 bp proximal
Tssr2257	transcription start site region 2257	911 bp downstream
Tssr66661	transcription start site region 66661	1272 bp upstream
Tssr66662	transcription start site region 66662	1605 bp upstream
Tssr72490	transcription start site region 72490	1736 bp upstream
Tssr72491	transcription start site region 72491	1508 bp upstream
Tssr72492	transcription start site region 72492	1293 bp upstream
Tssr72493	transcription start site region 72493	1261 bp upstream
Tssr72494	transcription start site region 72494	1251 bp upstream
Tssr72495	transcription start site region 72495	1235 bp upstream
Tssr72496	transcription start site region 72496	1149 bp upstream
Tssr72497	transcription start site region 72497	1046 bp upstream
Tssr72498	transcription start site region 72498	802 bp upstream
Tssr72499	transcription start site region 72499	617 bp upstream
Tssr72500	transcription start site region 72500	482 bp upstream
Tssr72501	transcription start site region 72501	1259 bp downstream
Tssr72502	transcription start site region 72502	1490 bp downstream