rs3162936 SNP Detail

Summary

• ID
  rs3162936
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64125543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATT AGCATTAGAA AGCTGGAAAG
  G
  AGTGGATTCT ATCTAGAAGA CTCGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149161578	ENSMUSSNP2822096	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss319744729	CHEV_1_64132958	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3162936					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64125543 () rs orientation: forward

Symbol	Name	Function Class
Gm13748	predicted gene 13748	within coordinates
Klf7	Kruppel-like transcription factor 7 (ubiquitous)	within coordinates
Rr886	regulatory region 886	975 bp proximal
Rr366923	regulatory region 366923	1532 bp upstream
Tssr7078	transcription start site region 7078	1806 bp upstream