rs31630679 SNP Detail

Summary

• ID
  rs31630679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85944303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCAAGGCA CTGTCACAAA ACCAGCCCTG CCTCAGTTTC
  CTTATCAGTG GGTGACTAAT GACAAGATAA GAGTTAACAA GATGGTGTGG GTTCCACGGC
  R
  GCCAGACACA CTCTAGGTGA GGAGTCAGGC AAGGCCATCC ACCCTGTGCC TCTCAGGTGG
  CTTAGTGGCC CTGCAGAGAT CGGAAGAATC TTCTCTCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39309465	mCV25421824	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31630679					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85944303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7499	CpG island 7499	520 bp distal
Gm41375	predicted gene, 41375	1486 bp upstream
Gramd4	GRAM domain containing 4	within coordinates
Rr507412	regulatory region 507412	1365 bp distal
Rr507413	regulatory region 507413	1828 bp distal
Rr507414	regulatory region 507414	within coordinates
Tssr132563	transcription start site region 132563	1309 bp downstream
Tssr132564	transcription start site region 132564	1251 bp downstream
Tssr135780	transcription start site region 135780	1511 bp upstream