rs31630985 SNP Detail

Summary

• ID
  rs31630985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44150669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGTTCTTT ATGTGACAAT CACCAAGGCA ACAGGCTGCC
  TCCAGGGCTT CCTCTAGGCC TCTCTGCCTT TGGTGCCTTG ATATGCAAGG GTTTTCCAAT
  Y
  GGCTTCCCTT TTTTCCCTCC GCTGGAGGTG ACATCCAGAG CCTCCACCTT CTAAGGAAGA
  CCCCACCCTC AGCCACACCC CATCCCCTCA CTATGGTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46052379	mCV25287540	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		C
ss51891393	NES14911136	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	T	T		T	C	T	T	T	T
ss149113595	ENSMUSSNP78438	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31630985					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891393	NES14911136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44150669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	795 bp distal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	444 bp upstream
Mybpc2	myosin binding protein C, fast-type	454 bp downstream
Rr646111	regulatory region 646111	328 bp proximal
Rr646112	regulatory region 646112	455 bp proximal
Rr646113	regulatory region 646113	663 bp proximal