rs31631624 SNP Detail

Summary

• ID
  rs31631624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76575431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAGGGC CATGGGGAGC
  GACCATGGAA GGAGGTGGCT GGCCTCAGGC CTCGGAAGCA TGTCCTCTTC CCTCCCAGCG
  TTGCCCTTCT GGAGGCTGCT GCCCGAAACG ACTTGGAGGA AGGTGAGTGT GCTTGAGTCC
  TAGGGCAGAG CAAAGCAGGC ACTCCCATCC GTCTGGGTGT GGCCCTGCGC TGTGTTGGCT
  Y
  GGAACTAGGC CTAGAATTGT CTCCAGCTCC TGGGCTCCAG CCACTCTGAT GCTGAGAGTG
  AACTGTCCTT AATAGGGGGT GGATGTAAGA GGTCTTTCTG TGAGGAAAGT CAGGCTATGG
  GAGGGCTGGA CCATGGGCAG ACACACTGGG GGTTGCAGAG AAGACTGTTA CATCACTGCC
  TCTCAACAGT GTGCCCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39309671	mCV23229438	ABI	CRAMUS_MOUSE	f	SNP	T	C	C					C		C
ss63562388	NES17020682	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss148166247	ENSMUSSNP4065884	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31631624					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562388	NES17020682	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76575431 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r16a	protein phosphatase 1, regulatory subunit 16A	within coordinates
Rr504822	regulatory region 504822	1691 bp distal
Tssr131814	transcription start site region 131814	652 bp downstream
Tssr131815	transcription start site region 131815	621 bp downstream
Tssr131816	transcription start site region 131816	7 bp upstream