rs31632611 SNP Detail

Summary

• ID
  rs31632611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10980245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACTGGC TGTTTCCCAG
  AGGACTGACT TTTGCTGCCC AGCGTTCACG TGTCACCTTA CAGCCATCTT GCCCTCAGAT
  ACAACACCCT CTTCTGGCCT CTGCAGGCAC CAGGCATGCC TACACTGCAC AGACACACAT
  GCAGGCAAAA AACTCGTACC AATTACAAAA TAAAATTTAA AAATTTAAAG CTTCTTACTT
  R
  TTTAATCTTT TTGCTTTAGG AGGTTTTTTG TTTGCGTCTA TATATTTTGT TATTGTTGTT
  GTCATTGTTG TTGTTGCTAT TGATTTGGAA CAGGGTCTCA TGTAGCCCAG GCTAGCTTTG
  AAATTGCTGT ATAGCCAAGG ATGACCTGGG ATTCCTGATG GCTCTTCTTC CACCCTCCAA
  GGGCTGGGAT AACAGTTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39309762	mCV24566645	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147066948	ENSMUSSNP4236458	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31632611					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10980245 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	1630 bp upstream
C1qtnf3	C1q and tumor necrosis factor related protein 3	9 bp downstream
Cpgi6946	CpG island 6946	1182 bp proximal
Gm34315	predicted gene, 34315	within coordinates
Gm52174	predicted gene, 52174	1640 bp upstream
Rr301970	regulatory region 301970	45 bp distal
Rr311562	regulatory region 311562	955 bp proximal
Rr390344	regulatory region 390344	2000 bp downstream
Tssr130700	transcription start site region 130700	1588 bp upstream
Tssr130701	transcription start site region 130701	1621 bp upstream