rs3163356 SNP Detail

Summary

• ID
  rs3163356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100323259 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTCC TTTACTTTCA TTCTTCCCAC
  R
  AGTCTTCCAC TCTGCCCTGG CAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45419757	mCV23822199	ABI	CRAMUS_MOUSE	r	SNP	T	T	T	C
ss320848734	CHEV_3_100219866	CHEVERUD	SCREENING_POP	r	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3163356					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100323259 () rs orientation: reverse

Symbol	Name	Function Class
Gm12464	predicted gene 12464	1368 bp downstream
Gm32471	predicted gene, 32471	1938 bp upstream
Rr581844	regulatory region 581844	1785 bp proximal
Rr581845	regulatory region 581845	1949 bp proximal