rs31634662 SNP Detail

Summary

• ID
  rs31634662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:38302853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG CGTGGTGCCC CCACACCCAC
  Y
  CTGCAGGCTG AGTTGTAAGG AGCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39310339	mCV24856029	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss324928920	CHEV_15_38232364	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31634662					SNP	T	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:38302853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7049	CpG island 7049	615 bp distal
Gm35248	predicted gene, 35248	within coordinates
Klf10	Kruppel-like transcription factor 10	1903 bp upstream
Rr501357	regulatory region 501357	1922 bp distal
Rr501358	regulatory region 501358	1728 bp distal
Rr501359	regulatory region 501359	1048 bp distal
Rr501360	regulatory region 501360	1034 bp distal
Rr501361	regulatory region 501361	within coordinates
Tssr131116	transcription start site region 131116	1389 bp downstream
Tssr134125	transcription start site region 134125	1938 bp upstream
Tssr134126	transcription start site region 134126	1894 bp upstream