rs3163517 SNP Detail

Summary

• ID
  rs3163517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100940062 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCAGA GGCAGGCGGA TTTCTGAGTT
  Y
  GAGGCCAGCC TGGTCTACAA AGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45501621	mCV24922922	ABI	CRAMUS_MOUSE	r	SNP	G	G	G	G	A
ss135543898	ENSMUSSNP4996812	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3163517					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100940062 () rs orientation: reverse

Symbol	Name	Function Class
Gm66113	predicted gene, 66113	within coordinates
Rr375455	regulatory region 375455	within coordinates
Rr581946	regulatory region 581946	986 bp distal