rs3163519 SNP Detail

Summary

• ID
  rs3163519
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100935834 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTATA CAACAAGGTC TGGAGGACCA
  K
  TTTTTAATCA CCAAGCTCAG AGAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45485113	mCV24922627	ABI	CRAMUS_MOUSE	r	SNP		A	A					A	C
ss46810307	NES10727261	PERLEGEN	MM_PANEL2	r	SNP	A		A	A	A	C	A		C	A	A		C	A		A
ss135543889	ENSMUSSNP1159882	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A						C
ss320850676	CHEV_3_100832441	CHEVERUD	SCREENING_POP	r	SNP												A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3163519					SNP	T	T	T	T	T	G	T	T	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810307	NES10727261	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100935834 () rs orientation: reverse

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581944	regulatory region 581944	1393 bp distal
Rr581945	regulatory region 581945	1028 bp proximal
Tssr34767	transcription start site region 34767	1006 bp downstream
Tssr34768	transcription start site region 34768	1025 bp downstream