rs31635788 SNP Detail

Summary

• ID
  rs31635788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125220201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATATGACA TATTGATTGG
  ACTGCAGATG ATTCTTTCAT TTTAATAATT TGCCTATTAT TTTAAGGGTA TCATTTATTT
  CCATCACTGT ATTGTGTAAT ATATAGCTCC AGTAAAGATA ATGTACTTAG AGTATGTTAC
  ATTCTATATG TTTATAAATA CATTGATTTT ATTACCAAAA TGGATTTCTT TCTGACTTAT
  Y
  AAAAATGCAA GAGCACACTG TGGAACACAT GTCTCTCTGA CGACATGGGT AGCTTTATAG
  GTGTCACAAC CCCTGGCTCT GCTTAATAGG AAGTGAATTT ACATTCCTGA AATCTTGCAA
  TATGAGAAAC AATGAGCAGA GTGAAAAGTA CTTTAGAAAA AATGATATCT ATAAAATACC
  ATAACTAGAT AGTTTATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45553801	mCV22728856	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss135808283	ENSMUSSNP102463	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss320936343	CHEV_3_125129470	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31635788					SNP	T	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125220201 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	354 bp distal