rs31636450 SNP Detail

Summary

• ID
  rs31636450
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:166025173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCACATAG CAGGGAGATG
  AGCTTTTCTA TTTTGGCTAA CACACAAGAG AAGCTGAATC TTGAGGACAA CTGCATGGGG
  GTGAGCTTGG TAGTGGATCC CAGAGTGAAA TCTCTGAGAG AGACCCATGC ATTCTGGTTA
  CTCTCATGCC CACCTTTTCC TATCTCCTCT CTCACTGCGG ACAACCTACC CACCGCCTTA
  M
  AAAACCATTT CTCATGTTCA GGCCCTTTTG TTTTGTCTTC TGGCCACTGA CTTTACCAAC
  TCTTTCTGTG TGACCATGAG TTTTGAACCG TCTATTGAAT CTAGGCTCAT CAATGGGTTC
  AAAGCTAAAG ATAACGATAG TCTCTTTCCT GGATCCACTA ATAGTTGATA GTGCAGAAGG
  ATGGAGTACA GGGGACCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47073730	NES11149810	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31636450					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47073730	NES11149810	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:166025173 () rs orientation: forward

Symbol	Name	Function Class
Tlr8	toll-like receptor 8	519 bp downstream
Tssr164588	transcription start site region 164588	1037 bp upstream
Tssr164589	transcription start site region 164589	919 bp upstream
Tssr164590	transcription start site region 164590	655 bp upstream
Tssr164591	transcription start site region 164591	540 bp upstream
Tssr164592	transcription start site region 164592	1906 bp downstream